4FRU

Crystal structure of horse wild-type cyclophilin B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.139 
  • R-Value Work: 0.116 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse.

Boudko, S.P.Ishikawa, Y.Lerch, T.F.Nix, J.Chapman, M.S.Bachinger, H.P.

(2012) BMC Res Notes 5: 626-626

  • DOI: 10.1186/1756-0500-5-626
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Hyperelastosis cutis is an inherited autosomal recessive connective tissue disorder. Affected horses are characterized by hyperextensible skin, scarring, and severe lesions along the back. The disorder is caused by a mutation in cyclophilin B.

    Hyperelastosis cutis is an inherited autosomal recessive connective tissue disorder. Affected horses are characterized by hyperextensible skin, scarring, and severe lesions along the back. The disorder is caused by a mutation in cyclophilin B.


    Organizational Affiliation

    Research Department, Shriners Hospital for Children, Portland, OR 97239, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptidyl-prolyl cis-trans isomerase
A
185Equus caballusGene Names: PPIB
EC: 5.2.1.8
Find proteins for A5YBL8 (Equus caballus)
Go to Gene View: PPIB
Go to UniProtKB:  A5YBL8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
ME2
Query on ME2

Download SDF File 
Download CCD File 
A
1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
C7 H16 O3
CNJRPYFBORAQAU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.139 
  • R-Value Work: 0.116 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 64.880α = 90.00
b = 44.070β = 95.20
c = 60.570γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-11-14
    Type: Initial release
  • Version 1.1: 2013-01-09
    Type: Database references
  • Version 1.2: 2013-03-13
    Type: Refinement description
  • Version 1.3: 2017-11-15
    Type: Refinement description