4FO1

Crystal structure of lincosamide antibiotic adenylyltransferase LnuA, apo

PDB DOI: https://doi.org/10.2210/pdb4FO1/pdb
Entry: 4FO1 supersedes: 4E8I

Classification: TRANSFERASE
Organism(s): Staphylococcus haemolyticus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-06-20 Released: 2012-07-04
Deposition Author(s): Stogios, P.J., Wawrzak, Z., Minasov, G., Evdokimova, E., Egorova, O., Kudritska, M., Yim, V., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.262
R-Value Work: 0.215
R-Value Observed: 0.218

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of lincosamide antibiotic adenylyltransferase LnuA, apo

Stogios, P.J., Wawrzak, Z., Minasov, G., Evdokimova, E., Egorova, O., Kudritska, M., Yim, V., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 39.46 kDa
Atom Count: 2,971
Modelled Residue Count: 316
Deposited Residue Count: 322
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lincosamide resistance protein	A, B	161	Staphylococcus haemolyticus	Mutation(s): 0 Gene Names: linA
UniProt
Find proteins for P06107 (Staphylococcus haemolyticus) Explore P06107 Go to UniProtKB: P06107
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P06107
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EPE Query on EPE Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth B] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B]	C [auth A], D [auth A], E [auth B], F [auth B]	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C₈ H₁₈ N₂ O₄ S JKMHFZQWWAIEOD-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.262
R-Value Work: 0.215
R-Value Observed: 0.218
Space Group: P 1 2₁ 1
Diffraction Data: https://doi.org/10.18430/M34FO1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.389	α = 90
b = 61.91	β = 103.24
c = 61.341	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
PHENIX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-07-04

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

This entry supersedes: 4E8I

Revision History (Full details and data files)

Version 1.0: 2012-07-04
Type: Initial release
Version 1.1: 2014-04-30
Changes: Structure summary
Version 1.2: 2014-05-07
Changes: Other
Version 1.3: 2018-01-24
Changes: Database references, Structure summary

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.