4FO1 | pdb_00004fo1

Crystal structure of lincosamide antibiotic adenylyltransferase LnuA, apo

• PDB DOI: https://doi.org/10.2210/pdb4FO1/pdb
• Entry: 4FO1 supersedes: 4E8I

• Classification: TRANSFERASE
• Organism(s): Staphylococcus haemolyticus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-06-20 Released: 2012-07-04 
• Deposition Author(s): Stogios, P.J., Wawrzak, Z., Minasov, G., Evdokimova, E., Egorova, O., Kudritska, M., Yim, V., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 
  0.262 (Depositor), 0.265 (DCC) 
• R-Value Work: 
  0.215 (Depositor), 0.217 (DCC) 
• R-Value Observed: 
  0.218 (Depositor) 

Literature

Crystal structure of lincosamide antibiotic adenylyltransferase LnuA, apo

Stogios, P.J., Wawrzak, Z., Minasov, G., Evdokimova, E., Egorova, O., Kudritska, M., Yim, V., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 39.46 kDa 
• Atom Count: 2,971 
• Modeled Residue Count: 316 
• Deposited Residue Count: 322 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lincosamide resistance protein	A, B	161	Staphylococcus haemolyticus	Mutation(s): 0  Gene Names: linA
UniProt
Find proteins for P06107 (Staphylococcus haemolyticus) Explore P06107  Go to UniProtKB:  P06107

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EPE	C [auth A], D [auth A], E [auth B], F [auth B]	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free:  0.262 (Depositor), 0.265 (DCC) 
• R-Value Work:  0.215 (Depositor), 0.217 (DCC) 
• R-Value Observed: 0.218 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m34fo1

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.389	α = 90
b = 61.91	β = 103.24
c = 61.341	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
PHENIX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-07-04 
Deposition Author(s): Stogios, P.J., Wawrzak, Z., Minasov, G., Evdokimova, E., Egorova, O., Kudritska, M., Yim, V., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
• This entry supersedes: 4E8I

Revision History  

• Version 1.0: 2012-07-04
  Type: Initial release
  
• Version 1.1: 2014-04-30
  Changes: Structure summary
• Version 1.2: 2014-05-07
  Changes: Other
• Version 1.3: 2018-01-24
  Changes: Database references, Structure summary
• Version 1.4: 2024-11-06
  Changes: Data collection, Database references, Derived calculations, Structure summary