4FBJ

Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif

Crow, A.Hughes, R.K.Taieb, F.Oswald, E.Banfield, M.J.

(2012) Proc.Natl.Acad.Sci.USA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypothetical protein
A
261Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)Mutation(s): 1 
Find proteins for Q7N439 (Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01))
Go to UniProtKB:  Q7N439
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NEDD8
B
88Homo sapiensMutation(s): 0 
Gene Names: NEDD8
Find proteins for Q15843 (Homo sapiens)
Go to Gene View: NEDD8
Go to UniProtKB:  Q15843
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.165 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 40.730α = 90.00
b = 56.090β = 104.13
c = 67.550γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
MOSFLMdata reduction
REFMACrefinement
SCALAdata scaling
ADSCdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-06-20
    Type: Initial release