4F8Y

Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.796 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.156 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans

Wang, Z.Li, L.Su, X.-D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADPH Quinone Oxidoreductase
A, B, C, D
196Streptococcus mutans serotype c (strain ATCC 700610 / UA159)Mutation(s): 0 
EC: 1.6.5.2
Find proteins for Q8DTD1 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159))
Go to UniProtKB:  Q8DTD1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
VK3
Query on VK3

Download SDF File 
Download CCD File 
A, B, C, D
MENADIONE
VITAMIN K3; 2-METHYL-1,4-NAPHTHALENEDIONE
C11 H8 O2
MJVAVZPDRWSRRC-UHFFFAOYSA-N
 Ligand Interaction
FAD
Query on FAD

Download SDF File 
Download CCD File 
A, B, C, D
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.796 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.156 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 50.614α = 90.00
b = 79.413β = 90.08
c = 106.502γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
ADSCdata collection
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-06-06
    Type: Initial release