Download MendeleyComplex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans
Wang, Z., Li, L., Su, X.-D.To be published.
4F8Y
Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans
- PDB DOI: 10.2210/pdb4F8Y/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Streptococcus mutans
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-05-18 Released: 2012-06-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.183
- R-Value Work: 0.156
- R-Value Observed: 0.157
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NADPH Quinone Oxidoreductase | A, B, C, D | 196 | Streptococcus mutans | Mutation(s): 0 Gene Names: SMU_1420 EC: 1.6.5.2 |  |
UniProt | |||||
Find proteins for Q8DTD1 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DTD1 Go to UniProtKB: Q8DTD1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8DTD1 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | E [auth A], G [auth B], I [auth C], K [auth D] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | Ligand Interaction | |
| VK3 Query on VK3 | F [auth A], H [auth B], J [auth C], L [auth D] | MENADIONE C11 H8 O2 MJVAVZPDRWSRRC-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.183
- R-Value Work: 0.156
- R-Value Observed: 0.157
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.614 | α = 90 |
| b = 79.413 | β = 90.08 |
| c = 106.502 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2012-06-06
Type: Initial release
