4F8C

Structure of the Cif:Nedd8 complex - Yersinia pseudotuberculosis Cycle Inhibiting Factor in complex with human Nedd8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif

Crow, A.Hughes, R.K.Taieb, F.Oswald, E.Banfield, M.J.

(2012) Proc.Natl.Acad.Sci.USA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cycle Inhibiting Factor
A, C
275Yersinia pseudotuberculosis serotype O:3 (strain YPIII)Mutation(s): 1 
Find proteins for A0A0H3B1Q8 (Yersinia pseudotuberculosis serotype O:3 (strain YPIII))
Go to UniProtKB:  A0A0H3B1Q8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NEDD8
B, D
88Homo sapiensMutation(s): 0 
Gene Names: NEDD8
Find proteins for Q15843 (Homo sapiens)
Go to Gene View: NEDD8
Go to UniProtKB:  Q15843
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.187 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 125.359α = 90.00
b = 125.359β = 90.00
c = 169.930γ = 120.00
Software Package:
Software NamePurpose
GDAdata collection
REFMACrefinement
MOLREPphasing
SCALAdata scaling
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-05-17 
  • Released Date: 2012-06-20 
  • Deposition Author(s): Crow, A., Banfield, M.

Revision History 

  • Version 1.0: 2012-06-20
    Type: Initial release