Macromolecule Content

Total Structure Weight: 21.66 kDa
Atom Count: 1377
Residue Count: 166
Unique protein chains: 1

4F44

Neurotrophin p75NTR intracellular domain

DOI: 10.2210/pdb4F44/pdb

Classification: SIGNALING PROTEIN
Organism(s): Rattus norvegicus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-05-10 Released: 2013-05-15
Deposition Author(s): Qu, Q., Jiang, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.280
R-Value Work: 0.228
R-Value Observed: 0.230

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into the allosteric activation mechanism of p75NTR

Qu, Q., Jiang, T.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor necrosis factor receptor superfamily member 16	A, B	94	Rattus norvegicus	Mutation(s): 0 Gene Names: Ngfr, NM_012610, Tnfrsf16
Find proteins for P07174 (Rattus norvegicus) Explore P07174 Go to UniProtKB: P07174
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MNB Query on MNB Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [B] MOL2 format, chain C [A] MOL2 format, chain D [B]	A, B	5-MERCAPTO-2-NITRO-BENZOIC ACID C₇ H₅ N O₄ S GANZODCWZFAEGN-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.280
R-Value Work: 0.228
R-Value Observed: 0.230
Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.372	α = 90
b = 53.372	β = 90
c = 73.486	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2012-05-10
Released Date: 2013-05-15

Deposition Author(s):

Revision History

Version 1.0: 2013-05-15
Type: Initial release
Version 1.1: 2013-05-22
Changes: Refinement description

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.