4F3P | pdb_00004f3p

Crystal structure of a Glutamine-binding periplasmic protein from Burkholderia pseudomallei in complex with glutamine

PDB DOI: https://doi.org/10.2210/pdb4F3P/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Burkholderia pseudomallei 1710b
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-05-09 Released: 2012-05-23
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.215 (Depositor), 0.216 (DCC)
R-Value Work:
0.177 (Depositor), 0.178 (DCC)
R-Value Observed:
0.179 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a Glutamine-binding periplasmic protein from Burkholderia pseudomallei in complex with glutamine

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Sankaran, B., Fairman, J.W., Staker, B., Myler, P., Stewart, L.

To be published.

Macromolecule Content

Total Structure Weight: 54.67 kDa
Atom Count: 3,477
Modeled Residue Count: 443
Deposited Residue Count: 498
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutamine-binding periplasmic protein	A, B	249	Burkholderia pseudomallei 1710b	Mutation(s): 0 Gene Names: BURPS1710b_A1487, glnH
UniProt
Find proteins for Q3JIF9 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JIF9 Go to UniProtKB: Q3JIF9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3JIF9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.215 (Depositor), 0.216 (DCC)
R-Value Work: 0.177 (Depositor), 0.178 (DCC)
R-Value Observed: 0.179 (Depositor)

Diffraction Data:

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.33	α = 90
b = 74.5	β = 100.63
c = 60.19	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
StructureStudio	data collection
XDS	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-05-23

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2012-05-23
Type: Initial release
Version 1.1: 2016-02-17
Changes: Structure summary
Version 1.2: 2017-10-11
Changes: Data collection
Version 1.3: 2023-09-13
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.