Macromolecule Content

Total Structure Weight: 35.34 kDa
Atom Count: 2534
Modelled Residue Count: 302
Deposited Residue Count: 310
Unique protein chains: 1

4F2T

Modulation of S.aureus Phosphatidylinositol-Specific Phospholipase C Membrane Binding.

PDB DOI: 10.2210/pdb4F2T/pdb

Classification: LYASE
Organism(s): Staphylococcus aureus subsp. aureus str. Newman
Expression System: Escherichia coli
Mutation(s): Yes
Membrane Protein: Yes OPM

Deposited: 2012-05-08 Released: 2012-12-12
Deposition Author(s): Cheng, J., Goldstein, R., Stec, B., Gershenson, A., Roberts, M.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.241
R-Value Work: 0.187
R-Value Observed: 0.190

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Competition between Anion Binding and Dimerization Modulates Staphylococcus aureus Phosphatidylinositol-specific Phospholipase C Enzymatic Activity.

Cheng, J., Goldstein, R., Stec, B., Gershenson, A., Roberts, M.F.

(2012) J Biol Chem 287: 40317-40327

PubMed: 23038258 Search on PubMedSearch on PubMed Central
DOI: 10.1074/jbc.M112.395277
Primary Citation of Related Structures:
4F2B, 4F2T, 4F2U

PubMed Abstract:

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1-phosphatidylinositol phosphodiesterase	A	310	Staphylococcus aureus subsp. aureus str. Newman	Mutation(s): 1 Gene Names: plc, NWMN_0041 EC: 4.6.1.13 Membrane Entity: Yes
UniProt
Find proteins for P45723 (Staphylococcus aureus (strain Newman)) Explore P45723 Go to UniProtKB: P45723
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P45723
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] SDF format, chain D [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A]	B [auth A], C [auth A], D [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.241
R-Value Work: 0.187
R-Value Observed: 0.190
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.088	α = 90
b = 55.957	β = 90
c = 61.681	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2012-05-08
Released Date: 2012-12-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-12-12
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.