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Download EndnoteStructures of a High-fidelity DNA Polymerase
Wang, W., Hellinga, H.W., Beese, L.S.To be published.
4F2S
DNA Polymerase I Large Fragment complex 4
- DOI: 10.2210/pdb4F2S/pdb
- NDB: NA1784
- Classification: Transferase/DNA
- Organism(s): Geobacillus kaustophilus (strain HTA426), synthetic construct
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): 2
- Deposited: 2012-05-08 Released: 2013-07-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.651 Å
- R-Value Free: 0.199
- R-Value Work: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| DNA polymerase | A, D | 592 | Geobacillus kaustophilus (strain HTA426) | Mutation(s): 2 Gene Names: polA EC: 2.7.7.7 |
Find proteins for Q5KWC1 (Geobacillus kaustophilus (strain HTA426)) Go to UniProtKB: Q5KWC1 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Length | Organism | |
| DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3') | B,E | 9 | synthetic construct | |
Entity ID: 3 | ||||
|---|---|---|---|---|
| Molecule | Chains | Length | Organism | |
| DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3') | C,F | 13 | synthetic construct | |
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SUC Query on SUC | A, D | SUCROSE C12 H22 O11 CZMRCDWAGMRECN-UGDNZRGBSA-N |  | Ligand Interaction | |
| MN Query on MN | D | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | D | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CTP Query on CTP | A, D | CYTIDINE-5'-TRIPHOSPHATE C9 H16 N3 O14 P3 PCDQPRRSZKQHHS-XVFCMESISA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| DOC Query on DOC | B, E | DNA LINKING | C9 H14 N3 O6 P |  | DC |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.651 Å
- R-Value Free: 0.199
- R-Value Work: 0.174
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 93.180 | α = 90.00 |
| b = 108.590 | β = 90.00 |
| c = 150.990 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| XDS | data reduction |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2012-05-08
- Released Date: 2013-07-24
- Deposition Author(s): Wang, W., Beese, L.S.
Revision History
- Version 1.0: 2013-07-24
Type: Initial release
