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Download EndnoteThe liganded structure of C. bescii family 3 pectate lyase
Alahuhta, P.M., Lunin, V.V.To be published.
4EW9
The liganded structure of C. bescii family 3 pectate lyase
- DOI: 10.2210/pdb4EW9/pdb
- Classification: LYASE
- Organism(s): Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
- Expression System: Escherichia coli
- Deposited: 2012-04-26 Released: 2013-03-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.6 Å
- R-Value Free: 0.204
- R-Value Work: 0.164
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Pectate lyase | A, B | 195 | Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) | Mutation(s): 0 EC: 4.2.2.2 |
Find proteins for B9MKT4 (Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)) Go to UniProtKB: B9MKT4 | ||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | A, B | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| CA Query on CA | A, B | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| UNG Query on UNG | A, B | 4-O-(4-DEOXY-BETA-L-THREO-HEX-4-ENOPYRANURONOSYL)-ALPHA-D-GALACTOPYRANURONIC ACID C12 H16 O12 LLVVMXFNKAHVEZ-HBQKDBDPSA-N |  | Ligand Interaction | |
| DGU Query on DGU | A, B | D-galacturonic acid D-Galacturonate C6 H10 O7 IAJILQKETJEXLJ-RSJOWCBRSA-N |  | Ligand Interaction | |
| MPD Query on MPD | A, B | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
| ADA Query on ADA | A | ALPHA-D-GALACTOPYRANURONIC ACID ALPHA D-GALACTURONIC ACID C6 H10 O7 AEMOLEFTQBMNLQ-BKBMJHBISA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.6 Å
- R-Value Free: 0.204
- R-Value Work: 0.164
- Space Group: C 1 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 136.946 | α = 90.00 |
| b = 35.898 | β = 132.00 |
| c = 98.687 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PROTEUM PLUS | data reduction |
| PHASER | phasing |
| PROTEUM PLUS | data collection |
| PROTEUM PLUS | data scaling |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2012-04-26
- Released Date: 2013-03-20
- Deposition Author(s): Alahuhta, P.M., Lunin, V.V.
Revision History
- Version 1.0: 2013-03-20
Type: Initial release
