4EW9

The liganded structure of C. bescii family 3 pectate lyase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The liganded structure of C. bescii family 3 pectate lyase

Alahuhta, P.M.Lunin, V.V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pectate lyase
A, B
195Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)Mutation(s): 0 
EC: 4.2.2.2
Find proteins for B9MKT4 (Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320))
Go to UniProtKB:  B9MKT4
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

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A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
UNG
Query on UNG

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A, B
4-O-(4-DEOXY-BETA-L-THREO-HEX-4-ENOPYRANURONOSYL)-ALPHA-D-GALACTOPYRANURONIC ACID
C12 H16 O12
LLVVMXFNKAHVEZ-HBQKDBDPSA-N
 Ligand Interaction
DGU
Query on DGU

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A, B
D-galacturonic acid
D-Galacturonate
C6 H10 O7
IAJILQKETJEXLJ-RSJOWCBRSA-N
 Ligand Interaction
MPD
Query on MPD

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Download CCD File 
A, B
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
ADA
Query on ADA

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Download CCD File 
A
ALPHA-D-GALACTOPYRANURONIC ACID
ALPHA D-GALACTURONIC ACID
C6 H10 O7
AEMOLEFTQBMNLQ-BKBMJHBISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.164 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 136.946α = 90.00
b = 35.898β = 132.00
c = 98.687γ = 90.00
Software Package:
Software NamePurpose
PROTEUM PLUSdata reduction
PHASERphasing
PROTEUM PLUSdata collection
PROTEUM PLUSdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-03-20
    Type: Initial release