4ETI | pdb_00004eti

Crystal Structure of YwlE from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb4ETI/pdb

• Classification: HYDROLASE
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-04-24 Released: 2012-05-23 
• Deposition Author(s): Cao, X.F., Brostromer, E., Liu, X.Y., Su, X.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.201 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.178 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.181 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of YwlE from Bacillus subtilis

Cao, X.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 20.41 kDa 
• Atom Count: 1,375 
• Modeled Residue Count: 150 
• Deposited Residue Count: 184 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Low molecular weight protein-tyrosine-phosphatase ywlE	A	184	Bacillus subtilis	Mutation(s): 0  Gene Names: ywlE, BSU36930, ipc-31d EC: 3.1.3.48 (PDB Primary Data), 3.9.1.2 (UniProt)
UniProt
Find proteins for P39155 (Bacillus subtilis (strain 168)) Explore P39155  Go to UniProtKB:  P39155

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FMT	B [auth A]	FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.201 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.178 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.736	α = 90
b = 38.764	β = 91.12
c = 40.463	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
PHENIX	model building
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-05-23 
Deposition Author(s): Cao, X.F., Brostromer, E., Liu, X.Y., Su, X.D.

Revision History  

• Version 1.0: 2012-05-23
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description