4EPT

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.229 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.

Sun, Q.Burke, J.P.Phan, J.Burns, M.C.Olejniczak, E.T.Waterson, A.G.Lee, T.Rossanese, O.W.Fesik, S.W.

(2012) Angew.Chem.Int.Ed.Engl. 51: 6140-6143


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
GTPase KRas
A
170Homo sapiensMutation(s): 1 
Gene Names: KRAS (KRAS2, RASK2)
Find proteins for P01116 (Homo sapiens)
Go to Gene View: KRAS
Go to UniProtKB:  P01116
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
0QW
Query on 0QW

Download SDF File 
Download CCD File 
A
(2-hydroxyphenyl)(pyrrolidin-1-yl)methanethione
C11 H13 N O S
QIKLOVZAPGSYNO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.229 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 93.055α = 90.00
b = 93.055β = 90.00
c = 37.202γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data scaling
PROTEUM PLUSdata collection
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-05-23
    Type: Initial release
  • Version 1.1: 2012-07-25
    Type: Database references