4EJE | pdb_00004eje

Structure Of The Tsg101 UEV Domain In Complex With an Ebola PTAP late Domain Peptide

• PDB DOI: https://doi.org/10.2210/pdb4EJE/pdb

• Classification: PROTEIN TRANSPORT
• Organism(s): Homo sapiens, Ebola virus - Mayinga, Zaire, 1976
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2012-04-06 Released: 2013-04-10 
• Deposition Author(s): Camara-Artigas, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.274 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.211 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.217 (Depositor) 

Starting Model: experimental

Literature

To be published

Camara-Artigas, A., Palencia, A., Andujar-Sanchez, M., Iglesias-Bexiga, M., Luque, I., Martinez, J.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 38.58 kDa 
• Atom Count: 2,529 
• Modeled Residue Count: 303 
• Deposited Residue Count: 336 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor susceptibility gene 101 protein	A, B	159	Homo sapiens	Mutation(s): 0  Gene Names: TSG101
UniProt & NIH Common Fund Data Resources
Find proteins for Q99816 (Homo sapiens) Explore Q99816  Go to UniProtKB:  Q99816
PHAROS:  Q99816 GTEx:  ENSG00000074319

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Matrix protein VP40	C, D	9	Ebola virus - Mayinga, Zaire, 1976	Mutation(s): 0
UniProt
Find proteins for Q05128 (Zaire ebolavirus (strain Mayinga-76)) Explore Q05128  Go to UniProtKB:  Q05128

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.274 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.211 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.217 (Depositor) 

Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.544	α = 90
b = 105.544	β = 90
c = 75.304	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-04-10 
Deposition Author(s): Camara-Artigas, A.

Revision History  

• Version 1.0: 2013-04-10
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Database references
• Version 1.2: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description