4EIX

Structural Studies of the ternary complex of Phaspholipase A2 with nimesulide and indomethacin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Studies of the ternary complex of Phaspholipase A2 with nimusulide and indomethacin

Shukla, P.K.Singh, N.Kumar, S.Bhushan, A.Sinha, M.Kaur, P.Sharma, S.Singh, T.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phospholipase A2 VRV-PL-VIIIa
A
121Daboia russeliiMutation(s): 0 
EC: 3.1.1.4
Find proteins for P59071 (Daboia russelii)
Go to UniProtKB:  P59071
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NIM
Query on NIM

Download SDF File 
Download CCD File 
A
4-NITRO-2-PHENOXYMETHANESULFONANILIDE
NIMESULIDE
C13 H12 N2 O5 S
HYWYRSMBCFDLJT-UHFFFAOYSA-N
 Ligand Interaction
CCN
Query on CCN

Download SDF File 
Download CCD File 
A
ACETONITRILE
C2 H3 N
WEVYAHXRMPXWCK-UHFFFAOYSA-N
 Ligand Interaction
IMN
Query on IMN

Download SDF File 
Download CCD File 
A
INDOMETHACIN
C19 H16 Cl N O4
CGIGDMFJXJATDK-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.184 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 52.880α = 90.00
b = 52.880β = 90.00
c = 48.420γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
AMoREphasing
CNSrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-04-25
    Type: Initial release