4ECL

Crystal structure of the cytoplasmic domain of vancomycin resistance serine racemase VanTg


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.017 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural and Functional Adaptation of Vancomycin Resistance VanT Serine Racemases.

Meziane-Cherif, D.Stogios, P.J.Evdokimova, E.Egorova, O.Savchenko, A.Courvalin, P.

(2015) MBio 6: e00806-e00806


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine racemase
A, B, C, D
374Enterococcus faecalisMutation(s): 0 
Gene Names: vanTG
EC: 5.1.1.1
Find proteins for Q6WRY3 (Enterococcus faecalis)
Go to UniProtKB:  Q6WRY3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 78.682α = 90.00
b = 82.341β = 90.14
c = 117.468γ = 90.00
Software Package:
Software NamePurpose
PHENIXmodel building
HKL-3000data collection
PHENIXphasing
HKL-3000data scaling
PHENIXrefinement
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-04-18
    Type: Initial release
  • Version 1.1: 2016-06-01
    Type: Database references