4E9M

NOD1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.245 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of nod1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit

Berry, E.A.Huang, L.S.Walker-Kopp, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleotide-binding oligomerization domain-containing protein 1
A, B, C, D, E, F
144Homo sapiensMutation(s): 0 
Gene Names: NOD1 (CARD4)
Find proteins for Q9Y239 (Homo sapiens)
Go to Gene View: NOD1
Go to UniProtKB:  Q9Y239
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download SDF File 
Download CCD File 
D
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.245 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 82.846α = 90.00
b = 85.335β = 90.00
c = 113.682γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
ADSCdata collection
CNSrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-04-04
    Type: Initial release
  • Version 1.1: 2013-02-06
    Type: Other