4E8S

Lambda-[Ru(TAP)2(dppz{Me2}2)]2+ bound to TCGGCGCCGA at high resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.129 
  • R-Value Work: 0.103 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru dppz Complexes to DNA

Hall, J.P.Beer, H.Buchner, K.Cardin, D.J.Cardin, C.J.

(2015) Organometallics --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'A10N/A
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RML
Query on RML

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Download CCD File 
A
(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)
Lambda-[Ru(1,4,5,8-tetraazaphenanthrene)2(11,12-dimethyl-dipyridophenazine)]2+
C40 H26 N12 Ru
GGHWDMRPXFPGCU-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
BA
Query on BA

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Download CCD File 
A
BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.129 
  • R-Value Work: 0.103 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 42.400α = 90.00
b = 42.400β = 90.00
c = 39.670γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
GDAdata collection
SHELXCDphasing
SHELXEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-03-20 
  • Released Date: 2013-03-20 
  • Deposition Author(s): Hall, J.P., Cardin, C.J.
  • This entry supersedes: 4DX4

Revision History 

  • Version 1.0: 2013-03-20
    Type: Initial release
  • Version 1.1: 2015-05-13
    Type: Database references
  • Version 1.2: 2017-03-08
    Type: Other
  • Version 1.3: 2017-11-15
    Type: Refinement description