4E6X

ClbP in complex boron-based inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The NRP peptidase ClbP as a target for the inhibition of genotoxicity, cell proliferation and tumorogenesis mediated by pks-harboring bacteria

Cougnoux, A.Delmas, J.Dalmasso, G.Romagnoli, C.Cuevas-Ramos, G.Oswald, E.Prati, F.Bonnet, R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ClbP peptidase
A, B, C
336Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)EC: 3.5.2.6
Find proteins for A0A0H2V8D3 (Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC))
Go to UniProtKB:  A0A0H2V8D3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
0NG
Query on 0NG

Download SDF File 
Download CCD File 
B, C
({[(chloromethyl)sulfonyl]amino}methyl)boronic acid
C2 H7 B Cl N O4 S
DYDOICABPAYWAK-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.200 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 105.050α = 90.00
b = 152.530β = 123.43
c = 86.890γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
DNAdata collection
REFMACrefinement
PHASERphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-03-27
    Type: Initial release