4E4H

Crystal structure of Histone Demethylase NO66


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

tructural Basis for Tetramerization-dependent Gene Repression by Histone Demethylase NO66

Tao, Y.Wu, M.Sinha, K.M.Zang, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysine-specific demethylase NO66
A, B, C, D
463Homo sapiensMutation(s): 0 
Gene Names: RIOX1 (C14orf169, MAPJD, NO66)
Find proteins for Q9H6W3 (Homo sapiens)
Go to Gene View: RIOX1
Go to UniProtKB:  Q9H6W3
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

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A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

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A, B, C, D
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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C
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.202 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 89.352α = 90.00
b = 89.352β = 90.00
c = 304.863γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data reduction
ADSCdata collection
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-03-13 
  • Released Date: 2013-01-30 
  • Deposition Author(s): Wu, M., Tao, Y., Zang, J.

Revision History 

  • Version 1.0: 2013-01-30
    Type: Initial release