4E1J

Crystal structure of glycerol kinase in complex with glycerol from Sinorhizobium meliloti 1021


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.233 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of glycerol kinase in complex with glycerol from Sinorhizobium meliloti 1021

Agarwal, R.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glycerol kinaseA, B, C, D520Sinorhizobium meliloti 1021Mutation(s): 0 
Gene Names: glpKRB1135SMb21009
EC: 2.7.1.30
UniProt
Find proteins for O86033 (Rhizobium meliloti (strain 1021))
Explore O86033 
Go to UniProtKB:  O86033
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO86033
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.233 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.22α = 90
b = 101.975β = 90.03
c = 107.548γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
AutoSolphasing
PHENIXmodel building
Cootmodel building
CCP4model building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
CCP4phasing

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-21
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Refinement description