4E01

Crystal structure of branched-chain alpha-ketoacid dehydrogenase kinase/3,6-dichlorobenzo[b]thiophene-2-carboxylic acid complex with AMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of branched-chain alpha-ketoacid dehydrogenase kinase-inhibitor complexes

Tso, S.C.Chuang, J.L.Gui, W.J.Wynn, R.M.Li, J.Chuang, D.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial
A
418Rattus norvegicusGene Names: Bckdk
EC: 2.7.11.4
Find proteins for Q00972 (Rattus norvegicus)
Go to UniProtKB:  Q00972
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
ANP
Query on ANP

Download SDF File 
Download CCD File 
A
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
0F1
Query on 0F1

Download SDF File 
Download CCD File 
A
3,6-dichloro-1-benzothiophene-2-carboxylic acid
C9 H4 Cl2 O2 S
AAHPIJMQJAZYTM-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.197 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 127.277α = 90.00
b = 127.277β = 90.00
c = 73.994γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXphasing
PHENIXmodel building
HKL-2000data scaling
HKL-3000data collection
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-03-27
    Type: Initial release