4DYV

Crystal structure of a short-chain dehydrogenase/reductase SDR from Xanthobacter autotrophicus Py2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of a short-chain dehydrogenase/reductase SDR from Xanthobacter autotrophicus Py2

Agarwal, R.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Short-chain dehydrogenase/reductase SDR
A
272Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)Mutation(s): 0 
Find proteins for A7IGZ0 (Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2))
Go to UniProtKB:  A7IGZ0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.166 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 71.901α = 90.00
b = 83.046β = 90.00
c = 93.503γ = 90.00
Software Package:
Software NamePurpose
CBASSdata collection
HKL-2000data scaling
HKL-2000data reduction
CCP4model building
CCP4phasing
Cootmodel building
AutoSolphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-03-14
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description