4DWJ

Crystal structure of Thymidylate Kinase from Staphylococcus aureus in complex with Thymidine Monophosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of Thymidylate Kinase from Staphylococcus aureus in complex with Thymidine Monophosphate

Filippova, E.V.Minasov, G.Shuvalova, L.Kiryukhina, O.Jedrzejczak, R.Joachimiak, A.Anderson, W.F.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymidylate kinase
A, B, C, D, E, F, G, H
229Staphylococcus aureus (strain Mu50 / ATCC 700699)Mutation(s): 0 
Gene Names: tmk
EC: 2.7.4.9
Find proteins for P65248 (Staphylococcus aureus (strain Mu50 / ATCC 700699))
Go to UniProtKB:  P65248
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TMP
Query on TMP

Download SDF File 
Download CCD File 
A, B, C, D, F, G, H
THYMIDINE-5'-PHOSPHATE
C10 H15 N2 O8 P
GYOZYWVXFNDGLU-XLPZGREQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 58.662α = 81.48
b = 73.409β = 90.10
c = 96.868γ = 90.12
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
HKL-3000data reduction
Blu-Icedata collection
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-03-07
    Type: Initial release
  • Version 1.1: 2012-04-11
    Type: Structure summary
  • Version 1.2: 2012-10-10
    Type: Structure summary
  • Version 1.3: 2017-11-15
    Type: Refinement description