Crystal structure of mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans PD1222 complexed with magnesium
Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein | 393 | Paracoccus denitrificans PD1222 | Mutation(s): 0  Gene Names: Pden_0244 | ||
UniProt | |||||
Find proteins for A1AYL4 (Paracoccus denitrificans (strain Pd 1222)) Explore A1AYL4  Go to UniProtKB:  A1AYL4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1AYL4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CL Query on CL | E [auth A], F [auth A], H [auth B], I [auth B], J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | C [auth A], D [auth A], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 136.598 | α = 90 |
b = 136.598 | β = 90 |
c = 80.603 | γ = 90 |
Software Name | Purpose |
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SCALEPACK | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CBASS | data collection |
HKL-3000 | data reduction |