4DQ6

Crystal structure of PLP-bound putative aminotransferase from Clostridium difficile 630


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.152 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structures of putative aminotransferase from Clostridium difficile 630

Shabalin, I.G.Onopriyenko, O.Kudritska, M.Grimshaw, S.Chruszcz, M.Porebski, P.J.Cooper, D.R.Savchenko, A.Anderson, W.F.Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative pyridoxal phosphate-dependent transferase
A, B
391Peptoclostridium difficile (strain 630)Mutation(s): 0 
Find proteins for Q183G9 (Peptoclostridium difficile (strain 630))
Go to UniProtKB:  Q183G9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
PLP
Query on PLP

Download SDF File 
Download CCD File 
A, B
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 79.426α = 90.00
b = 56.094β = 99.33
c = 85.275γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000data scaling
PDB_EXTRACTdata extraction
REFMACrefinement
HKL-3000data collection
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-02-29
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description