4DLF

Crystal structure of an amidohydrolase (COG3618) from burkholderia multivorans (TARGET EFI-500235) with bound ZN, space group P3221


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.925 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of an amidohydrolase (COG3618) from burkholderia multivorans (target efi-500235) with bound ZN, space group P3221

Vetting, M.W.Toro, R.Bhosle, R.Seidel, R.D.Hillerich, B.Washington, E.Scott Glenn, A.Chowdhury, S.Evans, B.Hammonds, J.Al Obaidi, N.F.Zencheck, W.D.Imker, H.J.Gerlt, J.A.Raushel, F.M.Almo, S.C.Enzyme Function Initiative (EFI)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Amidohydrolase 2
A
303Burkholderia multivorans (strain ATCC 17616 / 249)Mutation(s): 0 
Find proteins for A0A0H3KNC4 (Burkholderia multivorans (strain ATCC 17616 / 249))
Go to UniProtKB:  A0A0H3KNC4
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.925 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.193 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 75.300α = 90.00
b = 75.300β = 90.00
c = 142.450γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
PDB_EXTRACTdata extraction
SCALAdata scaling
CBASSdata collection
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-02-29
    Type: Initial release
  • Version 1.1: 2018-01-31
    Type: Database references