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Download EndnoteX-ray Crystal Structure of 28-O-Methylrapamycin complexed with FKBP12: Is the Cyclohexyl Moiety Part of the Effector Domain of Rapamycin?
Kallen, J., Sedrani, R., Cottens, S.(1996) J.Am.Chem.Soc. 118: 5857-5861
4DH0
X-ray Crystal Structure of 28-O-Methylrapamycin complexed with FKBP12: Is the Cyclohexyl Moiety Part of the Effector Domain of Rapamycin?
- DOI: 10.2210/pdb4DH0/pdb
- Classification: ISOMERASE/IMMUNOSUPPRESSANT
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Deposited: 2012-01-27 Released: 2012-02-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.1 Å
- R-Value Free: 0.257
- R-Value Work: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Peptidyl-prolyl cis-trans isomerase FKBP1A | A | 107 | Homo sapiens | Mutation(s): 0 Gene Names: FKBP1A (FKBP1, FKBP12) EC: 5.2.1.8 |
Find proteins for P62942 (Homo sapiens) Go to Gene View: FKBP1A Go to UniProtKB: P62942 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MR8 Query on MR8 | A | 28-O-Methylrapamycin (3S,6R,7E,9R,10R,12R,14S,15E,17E,19E,21S,23S,26R,27R,34aS)-27-hydroxy-3-{(2R)-1-[(1S,3R,4R)-4-hydroxy-3-methoxycyclohexyl]propan-2-yl}-9,10,21-trimethoxy-6,8,12,14,20,26-hexamethyl-9,10,12,13,14,21,22,23,24,25,26,27,32,33,34,34a-hexadecahydro-3H-23,27-epoxypyrido[2,1-c][1,4]oxazacyclohentriacontine-1,5,11,28,29(4H,6H,31H)-pentone 28-O-Methylrapamycin C52 H81 N O13 TXZXMCLTSBPVQD-JQEUAWNDSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.1 Å
- R-Value Free: 0.257
- R-Value Work: 0.217
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 45.500 | α = 90.00 |
| b = 49.700 | β = 90.00 |
| c = 55.300 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| MADNESS | data reduction |
| MADNESS | data collection |
| X-PLOR | phasing |
| REFMAC | refinement |
| ROTAVATA | data scaling |
| X-PLOR | model building |
Entry History
Deposition Data
- Deposited Date: 2012-01-27
- Released Date: 2012-02-15
- Deposition Author(s): Kallen, J.
