4DG6

Crystal structure of domains 1 and 2 of LRP6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.313 
  • R-Value Work: 0.257 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Characterization of the interaction of sclerostin with the LRP family of Wnt co-receptors

Holdsworth, G.Slocombe, P.Doyle, C.Sweeney, B.Veverka, V.Le Rich, K.Franklin, R.J.Brookings, D.Turner, J.Kennedy, J.Garlish, R.Shi, J.Newnham, L.McMillan, D.Muzylak, M.Carr, M.Henry, A.J.Ceska, T.Robinson, M.K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Low-density lipoprotein receptor-related protein 6
A
616Homo sapiensMutation(s): 0 
Gene Names: LRP6
Find proteins for O75581 (Homo sapiens)
Go to Gene View: LRP6
Go to UniProtKB:  O75581
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.313 
  • R-Value Work: 0.257 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 109.360α = 90.00
b = 109.360β = 90.00
c = 130.880γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
CNSrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-06-13
    Type: Initial release