4D9X

The crystal structure of Coptisine bound to DNA d(CGTACG)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.261 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of Coptisine bound to DNA d(CGTACG)

Ferraroni, M.Bazzicalupi, C.Gratteri, P.Bilia, A.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')A,B,C,D6N/A
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
KPT
Query on KPT

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Download CCD File 
C
6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium
Coptisine
C19 H14 N O4
XYHOBCMEDLZUMP-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.261 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 30.282α = 90.00
b = 30.282β = 90.00
c = 118.330γ = 120.00
Software Package:
Software NamePurpose
CrysalisProdata collection
XSCALEdata scaling
XDSdata reduction
MOLREPphasing
XDSdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-23
    Type: Initial release