Macromolecule Content

Total Structure Weight: 34801.37
Atom Count: 2450
Residue Count: 316
Unique protein chains: 1

4D91

Thermolysin In Complex With DMSO And Acetate

DOI: 10.2210/pdb4D91/pdb

Classification: HYDROLASE
Organism(s): Bacillus thermoproteolyticus

Deposited: 2012-01-11 Released: 2013-01-16
Deposition Author(s): Biela, A., Heine, A., Klebe, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.9 Å
R-Value Free: 0.184
R-Value Work: 0.150

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Thermolysin Inhibition

Biela, A., Nasief, N., Heine, A., Hangauer, D., Klebe, G.

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Thermolysin	A	316	Bacillus thermoproteolyticus	Mutation(s): 0 Gene Names: npr EC: 3.4.24.27
Find proteins for P00800 (Bacillus thermoproteolyticus) Go to UniProtKB: P00800
Protein Feature View Full Protein Feature View for P00800

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
ZN Query on ZN Download SDF File Download CCD File	A	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
ACT Query on ACT Download SDF File Download CCD File	A	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Ligand Interaction
CA Query on CA Download SDF File Download CCD File	A	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
DMS Query on DMS Download SDF File Download CCD File	A	DIMETHYL SULFOXIDE C₂ H₆ O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.9 Å
R-Value Free: 0.184
R-Value Work: 0.150
Space Group: P 6₁ 2 2

Unit Cell:

Length (Å)	Angle (°)
a = 93.425	α = 90.00
b = 93.425	β = 90.00
c = 129.923	γ = 120.00

Software Package:

Software Name	Purpose
SHELXE	model building
SHELXCD	phasing
MAR345dtb	data collection
PHENIX	refinement
SHELXD	phasing
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2012-01-11
Released Date: 2013-01-16
Deposition Author(s): Biela, A., Heine, A., Klebe, G.

Revision History

Version 1.0: 2013-01-16
Type: Initial release
Version 1.1: 2017-11-15
Type: Refinement description

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the National Institutes of Health, and the US Department of Energy (DE-SC0019749).