4D4J

human PFKFB3 in complex with a pyrrolopyrimidone compound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identifying a Novel Series of Pfkfb3 Inhibitors as a Metabolic Approach to Treating Cancer from Hts, Biophysical and Biochemical Methods

Stgallay, S.A.Bennett, N.Critchlow, S.Davies, G.Debreczeni, J.E.Evans, N.Holdgate, G.Jones, N.P.Leach, L.Maman, S.Mcloughlin, S.Preston, M.Rigoreau, L.Thomas, A.Walker, G.Walsch, J.Ward, R.A.Wheatley, E.Winter, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 3
A
449Homo sapiensMutation(s): 0 
Gene Names: PFKFB3
Find proteins for Q16875 (Homo sapiens)
Go to Gene View: PFKFB3
Go to UniProtKB:  Q16875
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BKI
Query on BKI

Download SDF File 
Download CCD File 
A
5-(4-bromophenyl)-7-phenyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one
C18 H12 Br N3 O
CPYVKWBLVMVKFH-UHFFFAOYSA-N
 Ligand Interaction
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
PHS
Query on PHS

Download SDF File 
Download CCD File 
A
PHOSPHONIC ACID
H3 O3 P
ABLZXFCXXLZCGV-UHFFFAOYSA-N
 Ligand Interaction
F6P
Query on F6P

Download SDF File 
Download CCD File 
A
FRUCTOSE-6-PHOSPHATE
C6 H13 O9 P
BGWGXPAPYGQALX-ARQDHWQXSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.190 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 102.430α = 90.00
b = 102.430β = 90.00
c = 258.630γ = 120.00
Software Package:
Software NamePurpose
BUSTERrefinement
PHASERphasing
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2016-01-20
    Type: Initial release