4CRY

Direct visualisation of strain-induced protein post-translational modification


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.150 
  • R-Value Work: 0.129 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Direct Visualisation of Strain-Induced Protein Post-Translational Modification

Monteiro, D.C.F.Patel, V.Bartlett, C.P.Grant, T.D.Nozaki, S.Gowdy, J.A.Snell, E.H.Niki, H.Pearson, A.R.Webb, M.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ASPARTATE 1-DECARBOXYLASE
A
41Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: panD
EC: 4.1.1.11
Find proteins for P0A790 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A790
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PANZ
B
137Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: panZ (panM, yhhK)
Find proteins for P37613 (Escherichia coli (strain K12))
Go to UniProtKB:  P37613
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ASPARTATE 1-DECARBOXYLASE
G
102Escherichia coli (strain K12)Mutation(s): 1 
Gene Names: panD
EC: 4.1.1.11
Find proteins for P0A790 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A790
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACO
Query on ACO

Download SDF File 
Download CCD File 
B
ACETYL COENZYME *A
C23 H38 N7 O17 P3 S
ZSLZBFCDCINBPY-ZSJPKINUSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
G
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.150 
  • R-Value Work: 0.129 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 86.400α = 90.00
b = 86.400β = 90.00
c = 81.000γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
MOLREPphasing
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-03-25
    Type: Initial release