4CMH

Crystal structure of CD38 with a novel CD38-targeting antibody SAR650984


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

SAR650984, a novel humanized CD38-targeting antibody, demonstrates potent antitumor activity in models of multiple myeloma and other CD38+ hematologic malignancies.

Deckert, J.Wetzel, M.C.Bartle, L.M.Skaletskaya, A.Goldmacher, V.S.Vallee, F.Zhou-Liu, Q.Ferrari, P.Pouzieux, S.Lahoute, C.Dumontet, C.Plesa, A.Chiron, M.Lejeune, P.Chittenden, T.Park, P.U.Blanc, V.

(2014) Clin. Cancer Res. 20: 4574-4583

  • DOI: 10.1158/1078-0432.CCR-14-0695

  • PubMed Abstract: 
  • The CD38 cell surface antigen is expressed in diverse hematologic malignancies including multiple myeloma, B-cell non-Hodgkin lymphoma (NHL), B-cell chronic lymphocytic leukemia, B-cell acute lymphoblastic leukemia (ALL), and T-cell ALL. Here, we ass ...

    The CD38 cell surface antigen is expressed in diverse hematologic malignancies including multiple myeloma, B-cell non-Hodgkin lymphoma (NHL), B-cell chronic lymphocytic leukemia, B-cell acute lymphoblastic leukemia (ALL), and T-cell ALL. Here, we assessed the antitumor activity of the anti-CD38 antibody SAR650984.


    Organizational Affiliation

    Biorealization/Operations and Protein Tools, Sanofi R&D, Vitry-sur-Seine, France.,Research and Development, ImmunoGen, Inc., Waltham, Massachusetts. jutta.deckert@immunogen.com.,Research and Development, ImmunoGen, Inc., Waltham, Massachusetts.,SCP LGCR/Structure Design & Informatics/Structural Biology, Sanofi R&D, Vitry-sur-Seine, France.,Oncology Business Division, Sanofi R&D, Vitry-sur-Seine, France.,Hematology Laboratory, Hospices Civils de Lyon, Pierre BĂ©nite, France and CRCL, INSERM 1052-CNRS 5286, Lyon, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ADP-RIBOSYL CYCLASE 1
A
256Homo sapiensMutation(s): 4 
Gene Names: CD38
EC: 3.2.2.6
Find proteins for P28907 (Homo sapiens)
Go to Gene View: CD38
Go to UniProtKB:  P28907
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HEAVY CHAIN OF SAR650984-FAB FRAGMENT
B
234N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
LIGHT CHAIN OF SAR650984-FAB FRAGMENT
C
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.188 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 43.619α = 90.00
b = 111.492β = 90.00
c = 147.877γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2014-07-16
    Type: Initial release
  • Version 1.1: 2014-09-10
    Type: Database references
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references, Source and taxonomy, Structure summary