4CMH

Crystal structure of CD38 with a novel CD38-targeting antibody SAR650984


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

SAR650984, a novel humanized CD38-targeting antibody, demonstrates potent antitumor activity in models of multiple myeloma and other CD38+ hematologic malignancies.

Deckert, J.Wetzel, M.C.Bartle, L.M.Skaletskaya, A.Goldmacher, V.S.Vallee, F.Zhou-Liu, Q.Ferrari, P.Pouzieux, S.Lahoute, C.Dumontet, C.Plesa, A.Chiron, M.Lejeune, P.Chittenden, T.Park, P.U.Blanc, V.

(2014) Clin Cancer Res 20: 4574-4583

  • DOI: 10.1158/1078-0432.CCR-14-0695
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The CD38 cell surface antigen is expressed in diverse hematologic malignancies including multiple myeloma, B-cell non-Hodgkin lymphoma (NHL), B-cell chronic lymphocytic leukemia, B-cell acute lymphoblastic leukemia (ALL), and T-cell ALL. Here, we ass ...

    The CD38 cell surface antigen is expressed in diverse hematologic malignancies including multiple myeloma, B-cell non-Hodgkin lymphoma (NHL), B-cell chronic lymphocytic leukemia, B-cell acute lymphoblastic leukemia (ALL), and T-cell ALL. Here, we assessed the antitumor activity of the anti-CD38 antibody SAR650984.


    Organizational Affiliation

    Oncology Business Division, Sanofi R&D, Vitry-sur-Seine, France.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HEAVY CHAIN OF SAR650984-FAB FRAGMENTB234Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ADP-RIBOSYL CYCLASE 1A256Homo sapiensMutation(s): 4 
Gene Names: CD38
EC: 3.2.2.5 (PDB Primary Data), 3.2.2.6 (UniProt), 2.4.99.20 (UniProt)
Find proteins for P28907 (Homo sapiens)
Explore P28907 
Go to UniProtKB:  P28907
NIH Common Fund Data Resources
PHAROS  P28907
Protein Feature View
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  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
LIGHT CHAIN OF SAR650984-FAB FRAGMENTC214Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.619α = 90
b = 111.492β = 90
c = 147.877γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement

Structure Validation

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Entry History 

Revision History 

  • Version 1.0: 2014-07-16
    Type: Initial release
  • Version 1.1: 2014-09-10
    Changes: Database references
  • Version 1.2: 2018-10-24
    Changes: Data collection, Database references, Source and taxonomy, Structure summary