4CIL

YopM-InlB: Hybrid leucine-rich repeat protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of an Engineered Yopm-Inlb Hybrid Protein.

Breitsprecher, D.Gherardi, E.Bleymuller, W.M.Niemann, H.H.

(2014) Bmc Struct.Biol. 14: 12

  • DOI: 10.1186/1472-6807-14-12

  • PubMed Abstract: 
  • The multi-domain protein InlB (internalin B) from Listeria monocytogenes is an agonist of the human receptor tyrosine kinase MET. Only the internalin domain directly interacts with MET. The internalin domain consists of seven central leucine-rich rep ...

    The multi-domain protein InlB (internalin B) from Listeria monocytogenes is an agonist of the human receptor tyrosine kinase MET. Only the internalin domain directly interacts with MET. The internalin domain consists of seven central leucine-rich repeats (LRRs) flanked by an N-terminal helical cap domain and a C-terminal immunoglobulin-like structure. A potential function of the N-terminal cap in receptor binding could so far not be demonstrated by deleting the cap, since the cap is also implicated in nucleating folding of the LRR domain.


    Organizational Affiliation

    Department of Molecular Structural Biology, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany. Hartmut.Niemann@uni-bielefeld.de.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YOPM-CAP, INTERNALIN B
A
287Yersinia enterocoliticaListeria monocytogenes serotype 1/2a (strain EGD / Mackaness)
This entity is chimeric
Mutation(s): 0 
Gene Names: yopM, inlB
Find proteins for P74988 (Yersinia enterocolitica)
Go to UniProtKB:  P74988
Find proteins for P0DQD3 (Listeria monocytogenes serotype 1/2a (strain EGD / Mackaness))
Go to UniProtKB:  P0DQD3
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.175 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 59.210α = 90.00
b = 30.680β = 90.98
c = 135.390γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-02
    Type: Initial release
  • Version 1.1: 2014-04-09
    Type: Database references
  • Version 1.2: 2017-03-15
    Type: Source and taxonomy
  • Version 1.3: 2019-03-06
    Type: Data collection, Experimental preparation