4C0G

Structure of the NOT-box domain of human CNOT3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Structure and Assembly of the not Module of the Human Ccr4-not Complex

Boland, A.Chen, Y.Raisch, T.Jonas, S.Kuzuoglu-Ozturk, D.Wohlbold, L.Weichenrieder, O.Izaurralde, E.

(2013) Nat.Struct.Mol.Biol. 20: 1289

  • DOI: 10.1038/nsmb.2681
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The CCR4-NOT deadenylase complex is a master regulator of translation and mRNA stability. Its NOT module orchestrates recruitment of the catalytic subunits to target mRNAs. We report the crystal structure of the human NOT module formed by the CNOT1, ...

    The CCR4-NOT deadenylase complex is a master regulator of translation and mRNA stability. Its NOT module orchestrates recruitment of the catalytic subunits to target mRNAs. We report the crystal structure of the human NOT module formed by the CNOT1, CNOT2 and CNOT3 C-terminal (-C) regions. CNOT1-C provides a rigid scaffold consisting of two perpendicular stacks of HEAT-like repeats. CNOT2-C and CNOT3-C heterodimerize through their SH3-like NOT-box domains. The heterodimer is stabilized and tightly anchored to the surface of CNOT1 through an unexpected intertwined arrangement of peptide regions lacking defined secondary structure. These assembly peptides mold onto their respective binding surfaces and form extensive interfaces. Mutagenesis of individual interfaces and perturbation of endogenous protein ratios cause defects in complex assembly and mRNA decay. Our studies provide a structural framework for understanding the recruitment of the CCR4-NOT complex to mRNA targets.


    Organizational Affiliation

    1] Department of Biochemistry, Max Planck Institute for Developmental Biology, Tübingen, Germany. [2].




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3
A, B, C, D, E, F
102Homo sapiensMutation(s): 0 
Gene Names: CNOT3 (KIAA0691, LENG2, NOT3)
Find proteins for O75175 (Homo sapiens)
Go to Gene View: CNOT3
Go to UniProtKB:  O75175
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.221 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 52.300α = 90.00
b = 97.570β = 90.00
c = 141.530γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
SHELXphasing
XDSdata reduction
XSCALEdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-09
    Type: Initial release
  • Version 1.1: 2013-10-16
    Type: Database references
  • Version 1.2: 2013-10-23
    Type: Database references
  • Version 1.3: 2013-11-20
    Type: Database references
  • Version 1.4: 2017-10-18
    Type: Data collection