4C02

Crystal structure of human ACVR1 (ALK2) in complex with FKBP12.6 and dorsomorphin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Human Acvr1 (Alk2) in Complex with Fkbp12.6 And Dorsomorphin

Williams, E.Riesebos, E.Vollmar, M.Krojer, T.Bradley, A.Shrestha, L.Kupinska, K.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Bullock, A.

(--) Ph D Thesis --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ACTIVIN RECEPTOR TYPE-1
A
330Homo sapiensMutation(s): 0 
Gene Names: ACVR1 (ACVRLK2)
EC: 2.7.11.30
Find proteins for Q04771 (Homo sapiens)
Go to Gene View: ACVR1
Go to UniProtKB:  Q04771
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1B
B
108Homo sapiensMutation(s): 0 
Gene Names: FKBP1B (FKBP12.6, FKBP1L, FKBP9, OTK4)
EC: 5.2.1.8
Find proteins for P68106 (Homo sapiens)
Go to Gene View: FKBP1B
Go to UniProtKB:  P68106
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
FLC
Query on FLC

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Download CCD File 
A, B
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
TAK
Query on TAK

Download SDF File 
Download CCD File 
A
6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine
Dorsomorphin
C24 H25 N5 O
XHBVYDAKJHETMP-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
TAKIC50: 9.8 - 148.1 nM (99) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.177 
  • Space Group: P 41 3 2
Unit Cell:
Length (Å)Angle (°)
a = 182.330α = 90.00
b = 182.330β = 90.00
c = 182.330γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
REFMACrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-08-07
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references