4BVY | pdb_00004bvy

Crystal structure of the AIMP3-MRS N-terminal domain complex

PDB DOI: https://doi.org/10.2210/pdb4BVY/pdb

Classification: LIGASE/TRANSLATION
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2013-06-29 Released: 2014-07-16
Deposition Author(s): Cho, H.Y., Seo, W.W., Cho, H.J., Kang, B.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free:
0.218 (Depositor), 0.220 (DCC)
R-Value Work:
0.189 (Depositor), 0.202 (DCC)
R-Value Observed:
0.190 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4BVY

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of the Aimp3-Mrs N-Terminal Domain Complex

Cho, H.Y., Seo, W.W., Cho, H.J., Kang, B.S.

To be published.

Macromolecule Content

Total Structure Weight: 47.11 kDa
Atom Count: 3,052
Modeled Residue Count: 379
Deposited Residue Count: 418
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
METHIONINE--TRNA LIGASE, CYTOPLASMIC	A	232	Homo sapiens	Mutation(s): 0 EC: 6.1.1.10
UniProt & NIH Common Fund Data Resources
Find proteins for P56192 (Homo sapiens) Explore P56192 Go to UniProtKB: P56192
PHAROS: P56192 GTEx: ENSG00000166986
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P56192
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1	B	186	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for O43324 (Homo sapiens) Explore O43324 Go to UniProtKB: O43324
PHAROS: O43324 GTEx: ENSG00000124802
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O43324
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.218 (Depositor), 0.220 (DCC)
R-Value Work: 0.189 (Depositor), 0.202 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.175	α = 90
b = 71.25	β = 104.83
c = 64.338	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-07-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-07-16
Type: Initial release
Version 1.1: 2024-05-08
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.