4BPL | pdb_00004bpl

rice importin_alpha in complex with nucleoplasmin NLS

PDB DOI: https://doi.org/10.2210/pdb4BPL/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Oryza sativa, Xenopus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-05-27 Released: 2014-02-19
Deposition Author(s): Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.224 (Depositor), 0.233 (DCC)
R-Value Work:
0.200 (Depositor), 0.202 (DCC)
R-Value Observed:
0.201 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 4BPL

This is version 1.2 of the entry. See complete history.

Literature

Structural Basis of Interaction of Bipartite Nuclear Localization Signal from Agrobacterium Vird2 with Rice Importin-Alpha

Chang, C.-W., Williams, S.J., Counago, R.M., Kobe, B.

(2014) Mol Plant 7: 1061

PubMed: 24503158 Search on PubMed
DOI: https://doi.org/10.1093/mp/ssu014
Primary Citation Related Structures:
4BPL, 4BQK

Organizational Affiliation

School of Chemistry and Molecular Biosciences, Institute for Molecular Bioscience, and Australian Infectious Diseases Research Centre, University of Queensland, Brisbane, Qld 4072, Australia.

Macromolecule Content

Total Structure Weight: 51.47 kDa
Atom Count: 3,675
Modeled Residue Count: 443
Deposited Residue Count: 475
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IMPORTIN SUBUNIT ALPHA-1A	A	454	Oryza sativa	Mutation(s): 0
UniProt
Find proteins for Q71VM4 (Oryza sativa subsp. japonica) Explore Q71VM4 Go to UniProtKB: Q71VM4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q71VM4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
NUCLEOPLASMIN NLS	B	21	Xenopus	Mutation(s): 0
UniProt
Find proteins for P05221 (Xenopus laevis) Explore P05221 Go to UniProtKB: P05221
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P05221
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.224 (Depositor), 0.233 (DCC)
R-Value Work: 0.200 (Depositor), 0.202 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.221	α = 90
b = 74.093	β = 90
c = 138.027	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-02-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-02-19
Type: Initial release
Version 1.1: 2014-06-18
Changes: Database references
Version 1.2: 2023-12-20
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.