4BLD

Crystal structure of a human Suppressor of fused (SUFU)-GLI3p complex

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.802 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history. 

Literature

Structural Basis of Sufu-GLI Interaction in Hedgehog Signalling Regulation

Cherry, A.L., Finta, C., Karlstrom, M., Jin, Q., Schwend, T., Astorga-Wells, J., Zubarev, R.A., Del Campo, M., Criswell, A.R., De Sanctis, D., Jovine, L., Toftgard, R.

(2013) Acta Crystallogr.,Sect.D 69: 2579

  • DOI: 10.1107/S0907444913028473
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • Hedgehog signalling plays a fundamental role in the control of metazoan development, cell proliferation and differentiation, as highlighted by the fact that its deregulation is associated with the development of many human tumours. SUFU is an essenti ...

    Hedgehog signalling plays a fundamental role in the control of metazoan development, cell proliferation and differentiation, as highlighted by the fact that its deregulation is associated with the development of many human tumours. SUFU is an essential intracellular negative regulator of mammalian Hedgehog signalling and acts by binding and modulating the activity of GLI transcription factors. Despite its central importance, little is known about SUFU regulation and the nature of SUFU-GLI interaction. Here, the crystal and small-angle X-ray scattering structures of full-length human SUFU and its complex with the key SYGHL motif conserved in all GLIs are reported. It is demonstrated that GLI binding is associated with major conformational changes in SUFU, including an intrinsically disordered loop that is also crucial for pathway activation. These findings reveal the structure of the SUFU-GLI interface and suggest a mechanism for an essential regulatory step in Hedgehog signalling, offering possibilities for the development of novel pathway modulators and therapeutics.

    Related Citations: 
    • Genetic Elimination of Suppressor of Fused Reveals an Essential Repressor Function in the Mammalian Hedgehog Signaling Pathway.
      Svard, J.,Heby-Henricson, K.,Persson-Lek, M.,Rozell, B.,Lauth, M.,Bergstrom, A.,Ericson, J.,Toftgard, R.,Teglund, S.
      (2006) Dev.Cell 10: 187
    • Mammalian Suppressor-of-Fused Modulates Nuclear-Cytoplasmic Shuttling of GLI-1.
      Kogerman, P.,Grimm, T.,Kogerman, L.,Krause, D.,Unden, A.B.,Sandstedt, B.,Toftgard, R.,Zaphiropoulos, P.G.
      (1999) Nat.Cell Biol. 1: 312
    • Characterization of the Physical Interaction of GLI Proteins with Sufu Proteins.
      Dunaeva, M.,Michelson, P.,Kogerman, P.,Toftgard, R.
      (2003) J.Biol.Chem. 278: 5116
    • Suppressor of Fused Regulates GLI Activity Through a Dual Binding Mechanism.
      Merchant, M.,Vajdos, F.F.,Ultsch, M.,Maun, H.R.,Wendt, U.,Cannon, J.,Desmarais, W.,Lazarus, R.A.,De Vos, A.M.,De Sauvage, F.J.
      (2004) Mol.Cell.Biol. 24: 8627

    Organizational Affiliation: 

    Department of Biosciences and Nutrition and Center for Biosciences, Karolinska Institutet, Novum, Hälsovägen 7, SE-141 83 Huddinge, Sweden.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MALTOSE-BINDING PERIPLASMIC PROTEIN, SUPPRESSOR OF FUSED HOMOLOG
A, B, C, D
753Homo sapiens, Escherichia coli (strain K12)
This entity is chimeric		Mutation(s): 10 
Gene Names: SUFU, malE
Find proteins for Q9UMX1 (Homo sapiens)
Go to Gene View: SUFU
Go to UniProtKB:  Q9UMX1
Find proteins for P0AEX9 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AEX9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
TRANSCRIPTIONAL ACTIVATOR GLI3
E, F, G, H
17Homo sapiensMutation(s): 0 
Gene Names: GLI3
Find proteins for P10071 (Homo sapiens)
Go to Gene View: GLI3
Go to UniProtKB:  P10071
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAL
Query on MAL
Download SDF File 
Download CCD File 
A, B, C, D
MALTOSE
C12 H22 O11
GUBGYTABKSRVRQ-ASMJPISFSA-N
 Ligand Interaction
ZN
Query on ZN
Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.802 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.201 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 116.610α = 90.00
b = 136.550β = 105.25
c = 116.740γ = 90.00
Software Package:
Software NamePurpose
xia2data scaling
Aimlessdata scaling
PHASERphasing
xia2data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-27
    Type: Initial release
  • Version 1.1: 2013-12-11
    Type: Derived calculations, Other
  • Version 1.2: 2013-12-18
    Type: Database references
  • Version 1.3: 2017-03-15
    Type: Source and taxonomy
  • Version 1.4: 2019-05-08
    Type: Data collection, Experimental preparation
  • Version 1.5: 2019-05-15
    Type: Data collection, Experimental preparation