Macromolecule Content

Total Structure Weight: 342.49 kDa
Atom Count: 23116
Modelled Residue Count: 2938
Deposited Residue Count: 3080
Unique protein chains: 2

4BLD

Crystal structure of a human Suppressor of fused (SUFU)-GLI3p complex

PDB DOI: 10.2210/pdb4BLD/pdb

Classification: SIGNALING PROTEIN
Organism(s): Escherichia coli, Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2013-05-02 Released: 2013-11-27
Deposition Author(s): Cherry, A.L., Finta, C., Karlstrom, M., De Sanctis, D., Toftgard, R., Jovine, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.234
R-Value Work: 0.201
R-Value Observed: 0.202

wwPDB Validation 3D Report Full Report

This is version 2.0 of the entry. See complete history.

Literature

Structural Basis of Sufu-GLI Interaction in Hedgehog Signalling Regulation

Cherry, A.L., Finta, C., Karlstrom, M., Jin, Q., Schwend, T., Astorga-Wells, J., Zubarev, R.A., Del Campo, M., Criswell, A.R., De Sanctis, D., Jovine, L., Toftgard, R.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2579

PubMed: 24311597 Search on PubMedSearch on PubMed Central
DOI: 10.1107/S0907444913028473
Primary Citation of Related Structures:
4BL8, 4BL9, 4BLA, 4BLB, 4BLD

PubMed Abstract:

Hedgehog signalling plays a fundamental role in the control of metazoan development, cell proliferation and differentiation, as highlighted by the fact that its deregulation is associated with the development of many human tumours. SUFU is an essential intracellular negative regulator of mammalian Hedgehog signalling and acts by binding and modulating the activity of GLI transcription factors. Despite its central importance, little is known about SUFU regulation and the nature of SUFU-GLI interaction. Here, the crystal and small-angle X-ray scattering structures of full-length human SUFU and its complex with the key SYGHL motif conserved in all GLIs are reported. It is demonstrated that GLI binding is associated with major conformational changes in SUFU, including an intrinsically disordered loop that is also crucial for pathway activation. These findings reveal the structure of the SUFU-GLI interface and suggest a mechanism for an essential regulatory step in Hedgehog signalling, offering possibilities for the development of novel pathway modulators and therapeutics.

Related Citations:

Mammalian Suppressor-of-Fused Modulates Nuclear-Cytoplasmic Shuttling of GLI-1.
Kogerman, P., Grimm, T., Kogerman, L., Krause, D., Unden, A.B., Sandstedt, B., Toftgard, R., Zaphiropoulos, P.G.
(1999) Nat Cell Biol 1: 312

Characterization of the Physical Interaction of GLI Proteins with Sufu Proteins.
Dunaeva, M., Michelson, P., Kogerman, P., Toftgard, R.
(2003) J Biol Chem 278: 5116

Suppressor of Fused Regulates GLI Activity Through a Dual Binding Mechanism.
Merchant, M., Vajdos, F.F., Ultsch, M., Maun, H.R., Wendt, U., Cannon, J., Desmarais, W., Lazarus, R.A., De Vos, A.M., De Sauvage, F.J.
(2004) Mol Cell Biol 24: 8627

Genetic Elimination of Suppressor of Fused Reveals an Essential Repressor Function in the Mammalian Hedgehog Signaling Pathway.
Svard, J., Heby-Henricson, K., Persson-Lek, M., Rozell, B., Lauth, M., Bergstrom, A., Ericson, J., Toftgard, R., Teglund, S.
(2006) Dev Cell 10: 187

Organizational Affiliation:

Department of Biosciences and Nutrition and Center for Biosciences, Karolinska Institutet, Novum, Hälsovägen 7, SE-141 83 Huddinge, Sweden.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MALTOSE-BINDING PERIPLASMIC PROTEIN, SUPPRESSOR OF FUSED HOMOLOG	A, B, C, D	753	Escherichia coli, Homo sapiens	Mutation(s): 10
UniProt & NIH Common Fund Data Resources
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9 Go to UniProtKB: P0AEX9
Find proteins for Q9UMX1 (Homo sapiens) Explore Q9UMX1 Go to UniProtKB: Q9UMX1
PHAROS: Q9UMX1 GTEx: ENSG00000107882
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P0AEX9Q9UMX1
Protein Feature View Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TRANSCRIPTIONAL ACTIVATOR GLI3	E, F, G, H	17	Homo sapiens	Mutation(s): 0 Gene Names: GLI3
UniProt & NIH Common Fund Data Resources
Find proteins for P10071 (Homo sapiens) Explore P10071 Go to UniProtKB: P10071
PHAROS: P10071 GTEx: ENSG00000106571
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P10071
Protein Feature View Expand
Reference Sequence

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Chain Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose	I, J, K, L	2		N/A	Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan: G07411ON GlyCosmos: G07411ON

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain N [auth B] SDF format, chain O [auth C] SDF format, chain P [auth D] MOL2 format, chain M [auth A] MOL2 format, chain N [auth B] MOL2 format, chain O [auth C] MOL2 format, chain P [auth D]	M [auth A], N [auth B], O [auth C], P [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 3
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_900001 Query on PRD_900001	I, J, K, L	alpha-maltose	Oligosaccharide / Nutrient		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.234
R-Value Work: 0.201
R-Value Observed: 0.202
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.61	α = 90
b = 136.55	β = 105.25
c = 116.74	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2013-05-02
Released Date: 2013-11-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-11-27
Type: Initial release
Version 1.1: 2013-12-11
Changes: Derived calculations, Other
Version 1.2: 2013-12-18
Changes: Database references
Version 1.3: 2017-03-15
Changes: Source and taxonomy
Version 1.4: 2019-05-08
Changes: Data collection, Experimental preparation
Version 1.5: 2019-05-15
Changes: Data collection, Experimental preparation
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary