4BLD

Crystal structure of a human Suppressor of fused (SUFU)-GLI3p complex

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history. 


Literature

Structural Basis of Sufu-GLI Interaction in Hedgehog Signalling Regulation

Cherry, A.L., Finta, C., Karlstrom, M., Jin, Q., Schwend, T., Astorga-Wells, J., Zubarev, R.A., Del Campo, M., Criswell, A.R., De Sanctis, D., Jovine, L., Toftgard, R.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2579

  • DOI: 10.1107/S0907444913028473
  • Primary Citation of Related Structures:  
    4BL8, 4BL9, 4BLA, 4BLB, 4BLD

  • PubMed Abstract: 

    • Hedgehog signalling plays a fundamental role in the control of metazoan development, cell proliferation and differentiation, as highlighted by the fact that its deregulation is associated with the development of many human tumours. SUFU is an essential intracellular negative regulator of mammalian Hedgehog signalling and acts by binding and modulating the activity of GLI transcription factors ...

    Hedgehog signalling plays a fundamental role in the control of metazoan development, cell proliferation and differentiation, as highlighted by the fact that its deregulation is associated with the development of many human tumours. SUFU is an essential intracellular negative regulator of mammalian Hedgehog signalling and acts by binding and modulating the activity of GLI transcription factors. Despite its central importance, little is known about SUFU regulation and the nature of SUFU-GLI interaction. Here, the crystal and small-angle X-ray scattering structures of full-length human SUFU and its complex with the key SYGHL motif conserved in all GLIs are reported. It is demonstrated that GLI binding is associated with major conformational changes in SUFU, including an intrinsically disordered loop that is also crucial for pathway activation. These findings reveal the structure of the SUFU-GLI interface and suggest a mechanism for an essential regulatory step in Hedgehog signalling, offering possibilities for the development of novel pathway modulators and therapeutics.

    Related Citations: 
    • Mammalian Suppressor-of-Fused Modulates Nuclear-Cytoplasmic Shuttling of GLI-1.
      Kogerman, P., Grimm, T., Kogerman, L., Krause, D., Unden, A.B., Sandstedt, B., Toftgard, R., Zaphiropoulos, P.G.
      (1999) Nat Cell Biol 1: 312
    • Characterization of the Physical Interaction of GLI Proteins with Sufu Proteins.
      Dunaeva, M., Michelson, P., Kogerman, P., Toftgard, R.
      (2003) J Biol Chem 278: 5116
    • Suppressor of Fused Regulates GLI Activity Through a Dual Binding Mechanism.
      Merchant, M., Vajdos, F.F., Ultsch, M., Maun, H.R., Wendt, U., Cannon, J., Desmarais, W., Lazarus, R.A., De Vos, A.M., De Sauvage, F.J.
      (2004) Mol Cell Biol 24: 8627
    • Genetic Elimination of Suppressor of Fused Reveals an Essential Repressor Function in the Mammalian Hedgehog Signaling Pathway.
      Svard, J., Heby-Henricson, K., Persson-Lek, M., Rozell, B., Lauth, M., Bergstrom, A., Ericson, J., Toftgard, R., Teglund, S.
      (2006) Dev Cell 10: 187
    Organizational Affiliation: 

    Department of Biosciences and Nutrition and Center for Biosciences, Karolinska Institutet, Novum, Hälsovägen 7, SE-141 83 Huddinge, Sweden.



Macromolecules
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(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MALTOSE-BINDING PERIPLASMIC PROTEIN, SUPPRESSOR OF FUSED HOMOLOGA, B, C, D753Escherichia coli, Homo sapiensMutation(s): 10 
UniProt & NIH Common Fund Data Resources
Find proteins for P0AEX9 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0AEX9
Find proteins for Q9UMX1 (Homo sapiens)
Explore Q9UMX1 
Go to UniProtKB:  Q9UMX1
PHAROS:  Q9UMX1
GTEx:  ENSG00000107882
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
TRANSCRIPTIONAL ACTIVATOR GLI3E, F, G, H17Homo sapiensMutation(s): 0 
Gene Names: GLI3
UniProt & NIH Common Fund Data Resources
Find proteins for P10071 (Homo sapiens)
Explore P10071 
Go to UniProtKB:  P10071
PHAROS:  P10071
GTEx:  ENSG00000106571
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 3
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranoseI, J, K, L2N/A Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G07411ON
GlyCosmos:  G07411ON
Small Molecules
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 3
IDChainsNameType/Class2D Diagram3D Interactions
PRD_900001
Query on PRD_900001		I, J, K, Lalpha-maltoseOligosaccharide / Nutrient Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.61α = 90
b = 136.55β = 105.25
c = 116.74γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-11-27
    Type: Initial release
  • Version 1.1: 2013-12-11
    Changes: Derived calculations, Other
  • Version 1.2: 2013-12-18
    Changes: Database references
  • Version 1.3: 2017-03-15
    Changes: Source and taxonomy
  • Version 1.4: 2019-05-08
    Changes: Data collection, Experimental preparation
  • Version 1.5: 2019-05-15
    Changes: Data collection, Experimental preparation
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary