4BL5

Crystal structure of human GDP-L-fucose synthase with bound NADP and product GDP-L-fucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of Human Gdp-L-Fucose Synthase with Bound Nadp and Product Gdp-L-Fucose

Vollmar, M.Shafqat, N.Rojkova, A.Krojer, T.Bradley, A.Raynor, J.W.Kavanagh, K.von Delft, F.Arrowsmith, C.H.Bountra, C.Edwards, A.Oppermann, U.Yue, W.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GDP-L-FUCOSE SYNTHASE
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H, I, J, K, L
336Homo sapiensMutation(s): 0 
Gene Names: GFUSSDR4E1TSTA3
EC: 1.1.1.271
UniProt & NIH Common Fund Data Resources
Find proteins for Q13630 (Homo sapiens)
Explore Q13630 
Go to UniProtKB:  Q13630
PHAROS:  Q13630
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download Ideal Coordinates CCD File 
BA [auth H] , DA [auth I] , FA [auth J] , HA [auth K] , JA [auth L] , M [auth A] , O [auth B] , Q [auth C] , 
BA [auth H],  DA [auth I],  FA [auth J],  HA [auth K],  JA [auth L],  M [auth A],  O [auth B],  Q [auth C],  S [auth D],  U [auth E],  W [auth F],  Z [auth G]
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
GFB
Query on GFB

Download Ideal Coordinates CCD File 
AA [auth G] , CA [auth H] , EA [auth I] , GA [auth J] , IA [auth K] , KA [auth L] , N [auth A] , P [auth B] , 
AA [auth G],  CA [auth H],  EA [auth I],  GA [auth J],  IA [auth K],  KA [auth L],  N [auth A],  P [auth B],  R [auth C],  T [auth D],  V [auth E],  X [auth F]
GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE
C16 H25 N5 O15 P2
LQEBEXMHBLQMDB-JGQUBWHWSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
Y [auth F]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.225 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.407α = 72.54
b = 90.478β = 72.64
c = 147.518γ = 60.14
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2018-01-24
    Changes: Database references