4BBQ

Crystal structure of the CXXC and PHD domain of Human Lysine-specific Demethylase 2A (KDM2A)(FBXL11)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of the Cxxc and Phd Domain of Human Lysine-Specific Demethylase 2A (Kdm2A)(Fbxl11)

Allerston, C.K.Watson, A.A.Edlich, C.Li, B.Chen, Y.Ball, L.Krojer, T.Arrowsmith, C.H.Edwards, A.Bountra, C.von Delft, F.Laue, E.D.Gileadi, O.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LYSINE-SPECIFIC DEMETHYLASE 2A
A, B
117Homo sapiensGene Names: KDM2A (CXXC8, FBL7, FBXL11, JHDM1A, KIAA1004)
EC: 1.14.11.27
Find proteins for Q9Y2K7 (Homo sapiens)
Go to Gene View: KDM2A
Go to UniProtKB:  Q9Y2K7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
ethane-1,2-diol
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.197 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 49.024α = 90.00
b = 30.053β = 91.66
c = 90.824γ = 90.00
Software Package:
Software NamePurpose
AutoPROCdata reduction
SHARPphasing
BUSTERrefinement
AP_SCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-10
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references, Structure summary