4BA9

The structural basis for the coordination of Y-family Translesion DNA Polymerases by Rev1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The Structural Basis for the Coordination of Y- Family Translesion DNA Polymerases by Rev1

Grummitt, C.G.Kilkenny, M.L.Frey, A.Roe, S.M.Oliver, A.W.Sale, J.E.Pearl, L.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA POLYMERASE KAPPA, DNA REPAIR PROTEIN REV1A, B, C, D, E, F114Homo sapiensMutation(s): 0 
Gene Names: POLK
EC: 2.7.7 (PDB Primary Data), 2.7.7.7 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBT6 (Homo sapiens)
Explore Q9UBT6 
Go to UniProtKB:  Q9UBT6
PHAROS:  Q9UBT6
Find proteins for Q9UBZ9 (Homo sapiens)
Explore Q9UBZ9 
Go to UniProtKB:  Q9UBZ9
PHAROS:  Q9UBZ9
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NI
Query on NI

Download Ideal Coordinates CCD File 
H [auth A] , I [auth A] , L [auth B] , M [auth B] , P [auth D] , Q [auth D] , T [auth E] , U [auth E] , 
H [auth A], I [auth A], L [auth B], M [auth B], P [auth D], Q [auth D], T [auth E], U [auth E], W [auth F], X [auth F]
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
G [auth A], J [auth B], K [auth B], N [auth C], O [auth D], R [auth E], S [auth E], V [auth F]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.75α = 90
b = 105.75β = 90
c = 424.27γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
SCALAdata scaling
SHELXphasing
SHARPphasing
BUSTERrefinement

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-09-25
    Type: Initial release
  • Version 1.1: 2017-03-15
    Changes: Source and taxonomy