4B6X | pdb_00004b6x

Crystal structure of in planta processed AvrRps4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.191 (Depositor), 0.207 (DCC) 
  • R-Value Work: 
    0.161 (Depositor), 0.186 (DCC) 
  • R-Value Observed: 
    0.164 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4B6X

This is version 1.3 of the entry. See complete history

Literature

Distinct Regions of the Pseudomonas Syringae Coiled-Coil Effector Avrrps4 are Required for Activation of Immunity.

Sohn, K.H.Hughes, R.K.Piquerez, S.J.Jones, J.D.G.Banfield, M.J.

(2012) Proc Natl Acad Sci U S A 109: 16371

  • DOI: https://doi.org/10.1073/pnas.1212332109
  • Primary Citation Related Structures: 
    4B6X

  • PubMed Abstract: 

    Gram-negative phytopathogenic bacteria translocate effector proteins into plant cells to subvert host defenses. These effectors can be recognized by plant nucleotide-binding-leucine-rich repeat immune receptors, triggering defense responses that restrict pathogen growth. AvrRps4, an effector protein from Pseudomonas syringae pv. pisi, triggers RPS4-dependent immunity in resistant accessions of Arabidopsis. To better understand the molecular basis of AvrRps4-triggered immunity, we determined the crystal structure of processed AvrRps4 (AvrRps4(C), residues 134-221), revealing that it forms an antiparallel α-helical coiled coil. Structure-informed mutagenesis reveals an electronegative surface patch in AvrRps4(C) required for recognition by RPS4; mutations in this region can also uncouple triggering of the hypersensitive response from disease resistance. This uncoupling may result from a lower level of defense activation, sufficient for avirulence but not for triggering a hypersensitive response. Natural variation in AvrRps4 reveals distinct recognition specificities that involve a surface-exposed residue. Recently, a direct interaction between AvrRps4 and Enhanced Disease Susceptibility 1 has been implicated in activation of immunity. However, we were unable to detect direct interaction between AvrRps4 and Enhanced Disease Susceptibility 1 after coexpression in Nicotiana benthamiana or in yeast cells. How intracellular plant immune receptors activate defense upon effector perception remains an unsolved problem. The structure of AvrRps4(C), and identification of functionally important residues for its activation of plant immunity, advances our understanding of these processes in a well-defined model pathosystem.


  • Organizational Affiliation
    • The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 20.25 kDa 
  • Atom Count: 1,130 
  • Modeled Residue Count: 127 
  • Deposited Residue Count: 180 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
AVIRULENCE PROTEIN
A, B
90Pseudomonas syringae pv. pisiMutation(s): 0 
UniProt
Find proteins for Q52432 (Pseudomonas syringae)
Explore Q52432 
Go to UniProtKB:  Q52432
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ52432
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ACT

Query on ACT



Download:Ideal Coordinates CCD File
C [auth B]ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.191 (Depositor), 0.207 (DCC) 
  • R-Value Work:  0.161 (Depositor), 0.186 (DCC) 
  • R-Value Observed: 0.164 (Depositor) 
Space Group: P 32 1 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.69α = 90
b = 64.69β = 90
c = 73.34γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-09-19
    Type: Initial release
  • Version 1.1: 2012-09-26
    Changes: Database references, Structure summary
  • Version 1.2: 2012-10-31
    Changes: Database references
  • Version 1.3: 2024-05-08
    Changes: Data collection, Database references, Derived calculations, Other