4B4O

Crystal Structure of human epimerase family protein SDR39U1 (isoform2) with NADPH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Human Epimerase Family Protein Sdr39U1 (Isoform2) with Nadph

Vollmar, M.Muniz, J.R.C.Shafqat, N.Picaud, S.Krojer, T.Chaikuad, A.Pike, A.C.W.Yue, W.W.Filippakopoulos, P.Kavanagh, K.L.von Delft, F.Weigelt, J.Arrowsmith, C.H.Bountra, C.Edwards, A.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
EPIMERASE FAMILY PROTEIN SDR39U1
A, B, C, D, E, F, G, H
298Homo sapiensMutation(s): 3 
Gene Names: SDR39U1 (C14orf124, HCDI)
EC: 1.1.1.-
Find proteins for Q9NRG7 (Homo sapiens)
Go to Gene View: SDR39U1
Go to UniProtKB:  Q9NRG7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PE4
Query on PE4

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000
C16 H34 O8
PJWQOENWHPEPKI-UHFFFAOYSA-N
 Ligand Interaction
NDP
Query on NDP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.198 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 80.824α = 89.93
b = 83.362β = 76.73
c = 105.191γ = 71.52
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
SCALAdata scaling
SHARPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-08-29
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references