4AWT

Crystal structure of the reduced Shewanella Yellow Enzyme 1 (SYE1) M25L mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.106 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Modulation of Isoalloxazine Ring Planarity Influences Fmn Electronic Properties in Old Yellow Enzymes

Elegheert, J.Pauwels, E.Wille, G.Brige, A.Savvides, S.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SYE1
A
365Shewanella oneidensis (strain MR-1)Mutation(s): 1 
Gene Names: sye1
Find proteins for Q8EEC8 (Shewanella oneidensis (strain MR-1))
Go to UniProtKB:  Q8EEC8
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PE4
Query on PE4

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A
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000
C16 H34 O8
PJWQOENWHPEPKI-UHFFFAOYSA-N
 Ligand Interaction
01F
Query on 01F

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A
ethyl hydrogen carbonate
C3 H6 O3
CQDGTJPVBWZJAZ-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMN
Query on FMN

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A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
BOG
Query on BOG

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Download CCD File 
A
B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SL5
Query on SL5
A
NON-POLYMERC8 H15 N O5

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.106 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.321α = 90.00
b = 83.749β = 90.00
c = 87.825γ = 90.00
Software Package:
Software NamePurpose
SHELXL-97refinement
PHASERphasing
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-06-26
    Type: Initial release