4AR4

Neutron crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin to 1.38 Angstrom resolution.


Experimental Data Snapshot

  • Method: NEUTRON DIFFRACTION
  • Resolution: 1.381 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.186 

wwPDB Validation

Currently 4AR4 does not have a wwPDB validation report.


This is version 1.3 of the entry. See complete history

Literature

Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes.

Cuypers, M.G.Mason, S.A.Blakeley, M.P.Mitchell, E.P.Haertlein, M.Forsyth, V.T.

(2013) Angew.Chem.Int.Ed.Engl. 52: 1022


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RUBREDOXIN
A
54Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Gene Names: rub
Find proteins for P24297 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  P24297
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
D8U
Query on D8U

Download SDF File 
Download CCD File 
A
deuterium(1+)
D
GPRLSGONYQIRFK-DYCDLGHISA-N
 Ligand Interaction
D3O
Query on D3O

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Download CCD File 
A
trideuteriooxidanium
perdeuterated oxonium
O
XLYOFNOQVPJJNP-ZRLBSURWSA-O
 Ligand Interaction
FE
Query on FE

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Download CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
DOD
Query on DOD

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Download CCD File 
A
DEUTERATED WATER
D2 O
XLYOFNOQVPJJNP-ZSJDYOACSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: NEUTRON DIFFRACTION
  • Resolution: 1.381 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.186 
Software Package:
Software NamePurpose
RETREATdata reduction
PHENIXrefinement
RETREATdata scaling

Structure Validation

Currently 4AR4 does not have a wwPDB validation report.



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2013-03-06
    Type: Database references
  • Version 1.2: 2013-08-14
    Type: Atomic model
  • Version 1.3: 2017-03-22
    Type: Atomic model, Data collection, Structure summary