4AON

Conformational dynamics of aspartate alpha-decarboxylase active site revealed by protein-ligand complexes: 1-methyl-L-aspartate complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.162 
  • R-Value Work: 0.135 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Conformational Dynamics of Aspartate Alpha Decarboxylase Active Site Revealed by Protein-Ligand Complexes

Yorke, B.A.Monteiro, D.C.F.Pearson, A.R.Webb, M.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ASPARTATE-ALPHA-DECARBOXYLASE BETA CHAIN
A, D
41Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: panD
EC: 4.1.1.11
Find proteins for P0A790 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A790
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ASPARTATE-ALPHA-DECARBOXYLASE ALPHA CHAIN
B, E
102Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: panD
EC: 4.1.1.11
Find proteins for P0A790 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A790
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLU
Query on GLU

Download SDF File 
Download CCD File 
B, E
GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PYR
Query on PYR
B, E
NON-POLYMERC3 H4 O3

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.162 
  • R-Value Work: 0.135 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 71.022α = 90.00
b = 71.022β = 90.00
c = 216.376γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
MOLREPphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-31
    Type: Initial release