4ABT

Crystal structure of Type IIF restriction endonuclease NgoMIV with cognate uncleaved DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.22 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of Type Iif Restriction Endonuclease Ngomiv with Cognate Uncleaved DNA

Manakova, E.N.Grazulis, S.Zaremba, M.Tamulaitiene, G.Golovenko, D.Siksnys, V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TYPE-2 RESTRICTION ENZYME NGOMIV
A, B
286Neisseria gonorrhoeaeMutation(s): 0 
Gene Names: ngoMIVR
EC: 3.1.21.4
Find proteins for P31032 (Neisseria gonorrhoeae)
Go to UniProtKB:  P31032
Entity ID: 2
MoleculeChainsLengthOrganism
5'-D(*TP*GP*CP*GP*CP*CP*GP*GP*CP*GP*CP)-3'E,G11Neisseria gonorrhoeae
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, E
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.22 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.180 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 68.899α = 90.00
b = 90.081β = 90.00
c = 92.711γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
AMoREphasing
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-12-28
    Type: Initial release
  • Version 1.1: 2016-08-10
    Type: Database references, Other