4A6U

Crystal structure of the omega transaminase from Chromobacterium violaceum in the apo form, crystallised from PEG 3350


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.687 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structures of the Chromobacterium Violaceum Omega-Transaminase Reveal Major Structural Rearrangements Upon Binding of Coenzyme Plp.

Svedendahl Humble, M.Engelmark Cassimjee, K.Hakansson, M.Kimbung, Y.R.Walse, B.Abedi, V.Federsel, H.-J.Berglund, P.Logan, D.T.

(2012) FEBS J. 279: 779


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
OMEGA TRANSAMINASE
A, B
459Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)EC: 2.6.1.62
Find proteins for Q7NWG4 (Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757))
Go to UniProtKB:  Q7NWG4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
SCN
Query on SCN

Download SDF File 
Download CCD File 
A, B
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.687 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.154 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 57.170α = 109.14
b = 61.110β = 85.59
c = 60.240γ = 103.25
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-01-25
    Type: Initial release
  • Version 1.1: 2012-08-01
    Type: Database references
  • Version 1.2: 2018-01-17
    Type: Data collection