4A27

Crystal structure of human synaptic vesicle membrane protein VAT-1 homolog-like protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein

Vollmar, M.Shafqat, N.Muniz, J.R.C.Krojer, T.Allerston, C.von Delft, F.Bountra, C.Arrowsmith, C.H.Weigelt, J.Edwards, A.Yue, W.W.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE
A, B
349Homo sapiensMutation(s): 0 
Gene Names: VAT1L (KIAA1576)
EC: 1.-.-.-
Find proteins for Q9HCJ6 (Homo sapiens)
Go to Gene View: VAT1L
Go to UniProtKB:  Q9HCJ6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.185 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 69.509α = 90.00
b = 62.104β = 106.98
c = 83.795γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SHARPphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-10-19
    Type: Initial release
  • Version 1.1: 2012-11-14
    Type: Database references
  • Version 1.2: 2018-01-24
    Type: Database references